Tags: biology

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Monday, September 26th, 2022

Fermented Code: Modelling the Microbial Through Miso - Serpentine Galleries

Y’know, I started reading this great piece by Claire L. Evans thinking about its connections to systems thinking, but I ended up thinking more about prototyping. And microbes.

Tuesday, September 20th, 2022

Have I reached the Douglas Adams Inflection point (or is modern tech just a bit rubbish)? – Terence Eden’s Blog

This chimes with something I’ve been pondering: we anticipate big breakthoughs in software—AI!, blockchain!, metaverse! chatbots!—but in reality the field is relatively stagnant. Meanwhile in areas like biology, there’s been unexpected advances. Or maybe, as Terence indicates, it’s all about the hype.

Tuesday, February 22nd, 2022

Bones, Bones: How to Articulate a Whale

I found this to be thoroughly engrossing. An articulate composition, you might say.

I couldn’t help thinking of J.G. Ballard’s short story, The Drowned Giant.

Tuesday, July 20th, 2021

What is a woman? - Prospect Magazine

An excellent thoughtful piece from Angela Saini (as always):

Popular opinion, “common sense” and the closely related priors of scientific enquiry have never been reliable guides when it comes to decoding human difference. After all, European biologists once thought it was obvious that colour-coded races were different species or breeds that had evolved separately on each continent. It was obvious to taxonomist Carl Linnaeus that monster-like and feral races of humans surely existed somewhere in the world. More recently, neuroscientists were happily insisting that women were innately less intelligent than men because they had smaller brains. A few neuroscientists still do.

History shows that many supposed “facts” about human nature were actually always cultural constructions. Race is one. Gender is another. Now, some researchers believe that sex—generally seen as determined by anatomy, including chromosomes, hormones and genitalia—may to some extent be constructed, too. Binary categories of male and female, they say, certainly don’t fully encompass all the natural variation and complexity that we see in our species.

Tuesday, April 27th, 2021

The Botanist Who Defied Stalin - Issue 99: Universality - Nautilus

Lysenko vs. Vavilov feels like the 20th century version of Edison vs. Tesla.

Saturday, March 27th, 2021

Blackout in the Brain Lab - Issue 98: Mind - Nautilus

Black Mirror meets Henrietta Lacks in this short story by Erik Hoel who I had not heard of until today, when I came across his name here and also in a completely unrelated blog post by Peter Watts about the nature of dreams.

Sunday, August 9th, 2020

Beyond Smart Rocks

Claire L. Evans on computational slime molds and other forms of unconvential computing that look beyond silicon:

In moments of technological frustration, it helps to remember that a computer is basically a rock. That is its fundamental witchcraft, or ours: for all its processing power, the device that runs your life is just a complex arrangement of minerals animated by electricity and language. Smart rocks.

Sunday, July 19th, 2020

Coldwater.Science

The World Ocean is as close as you can get to outer space without leaving Earth. It’s an entirely different universe, nothing like the life we have on land.

Tuesday, July 14th, 2020

Ariel Waldman: The colorful critter world of microbes in Antarctica | TED Talk

Ariel gave a TED talk and it’s mind-blowingly good!

Sunday, June 28th, 2020

Hemimastigophora

Probably fewer than a hundred people in the world have seen what you’re looking at right now.

Jessica and I were taking turns at the microscope when we were told that.

Let me back up a bit and explain how we found ourselves in this this situation…

It all started with The Session, the traditional Irish music community site that I run. There’s a big focus on getting together and playing music—something that’s taken a big hit during this global pandemic. Three sections of the website are devoted to face-to-face gatherings: events (like concerts and festivals), sessions, and the most recent addition, trips.

The idea with trips is that you input somewhere you’re going to be travelling to, along with the dates you’ll be there. It’s like a hyper-focused version of Dopplr. The site then shows you if any events are happening, if there are any sessions on, and also if there are any members of the site in that locality (if those members have added their location to their profiles).

Last August, I added the trips I would be taking in the States. There’s be a trip to Saint Augustine to hang out with Jessica’s family, a trip to Chicago to speak at An Event Apart, and a trip to New York for a couple of days because that’s where the ocean liner was going to deposit us after our transatlantic crossing.

A fellow member of The Session named Aaron who is based in New York saw my trip and contacted me to let me know about the session he goes to (he plays tin whistle). Alas, that session didn’t coincide with our short trip. But he also added:

I work at the American Museum of Natural History, and if you have time and interest, I can provide you with vouchers for tickets to as many special exhibits and such as you’d like!

Ooh, that sounded like fun! He also said:

In fact I could give you a quick behind-the-scenes tour if you’re interested.

Jessica and I didn’t have any set plans for our time in New York, so we said why not?

That’s how we ended spending a lovely afternoon being shown around the parts of the museum that the public don’t usually get to see. It’s quite the collection of curiosities back there!

There’s also plenty of research. Aaron’s particular area was looking into an entirely different kingdom of life—neither animal, nor plant, nor fungus. Remarkably, these microscopic creatures were first identified—by a classmate of Aaron’s—by happenstance in 2016:

The hemimastigotes analyzed by the Dalhousie team were found by Eglit during a spring hike with some other students along the Bluff Wilderness Trail outside Halifax a couple of years ago. She often has empty sample vials in her pockets or bags, and scooped a few tablespoons of dirt into one of them from the side of the trail.

That’s like a doctor announcing that they’d come across a hitherto-unknown limb on the human body. The findings were published in the paper, Hemimastigophora is a novel supra-kingdom-level lineage of eukaryotes in 2018.

In the “backstage” area of the American Museum of Natural History, Aaron had samples of them. He put them under the microscope for us. As we took turns looking at them wriggling their flagella, Aaron said:

Probably fewer than a hundred people in the world have seen what you’re looking at right now.

Saturday, May 23rd, 2020

Strangest of All: Anthology of Astrobiological Science Fiction [PDF]

Eight sci-fi stories gathered together by the European Astrobiology Institute. This free book is also available as .mobi and .epub.

Tuesday, January 7th, 2020

Life Under The Ice

Here’s the latest wonderful project from Ariel—explore microscopic specimens from Antarctica:

The collected Antarctic microbes were found living within glaciers, under the sea ice, next to frozen lakes, and in subglacial ponds.

Beautiful!

Friday, December 13th, 2019

The Deep Sea

After showing us the size of space, here’s a fascinating intereactive visualisation of the ocean depths.

Friday, September 27th, 2019

The Octopus: An Alien Among Us | Literary Hub

An excerpt from the book Rethinking Consciousness by Michael S. A. Graziano, which looks like an interesting companion piece to Peter Godfrey-Smith’s excellent Other Minds.

Also, can I just say how nice this reading experience is—the typography, the arresting image …I like it.

Monday, April 8th, 2019

Tellart | Design Nonfiction

An online documentary series featuring interviews with smart people about the changing role of design.

As technology becomes more complex and opaque, how will we as designers understand its potential, do hands-on work, translate it into forms people can understand and use, and lead meaningful conversations with manufacturers and policymakers about its downstream implications? We are entering a new technology landscape shaped by artificial intelligence, advanced robotics and synthetic biology.

So far there’s Kevin Slavin, Molly Wright Steenson, and Alexandra Daisy Ginsberg, with more to come from the likes of Matt Jones, Anab Jain, Dan Hill, and many, many more.

Sunday, February 17th, 2019

Is the universe pro-life? The Fermi paradox can help explain — Quartz

Living things are just a better way for nature to dissipate energy and increase the universe’s entropy.

No anthropocentric exceptionalism here; just the laws of thermodynamics.

According to the inevitable life theory, biological systems spontaneously emerge because they more efficiently disperse, or “dissipate” energy, thereby increasing the entropy of the surroundings. In other words, life is thermodynamically favorable.

As a consequence of this fact, something that seems almost magical happens, but there is nothing supernatural about it. When an inanimate system of particles, like a group of atoms, is bombarded with flowing energy (such as concentrated currents of electricity or heat), that system will often self-organize into a more complex configuration—specifically an arrangement that allows the system to more efficiently dissipate the incoming energy, converting it into entropy.

Saturday, September 1st, 2018

The Ecological Impact of Browser Diversity | CSS-Tricks

This is a terrific spot-on piece by Rachel. I firmly believe that healthy competition and diversity in the browser market is vital for the health of the web (which is why I’m always saddened and frustrated to hear web developers wish for a single monocultural rendering engine).

Thursday, May 3rd, 2018

Orion Magazine | State of the Species

A great piece from Charles C. Mann from five years ago, where you can see the genesis of The Wizard And The Prophet.

For hundreds of thousands of years, our species had been restricted to East Africa (and, possibly, a similar area in the south). Now, abruptly, new-model Homo sapiens were racing across the continents like so many imported fire ants. The difference between humans and fire ants is that fire ants specialize in disturbed habitats. Humans, too, specialize in disturbed habitats—but we do the disturbing.

Sunday, April 15th, 2018

Was There a Civilization On Earth Before Humans? - The Atlantic

So, could researchers find clear evidence that an ancient species built a relatively short-lived industrial civilization long before our own? Perhaps, for example, some early mammal rose briefly to civilization building during the Paleocene epoch about 60 million years ago. There are fossils, of course. But the fraction of life that gets fossilized is always minuscule and varies a lot depending on time and habitat. It would be easy, therefore, to miss an industrial civilization that only lasted 100,000 years—which would be 500 times longer than our industrial civilization has made it so far.

Sunday, February 25th, 2018

Cooking with Ursula K. Le Guin

Recipes inspired by The Left Hand Of Darkness.

I mostly stuck to Le Guin’s world-building rules for Winter, which were “no large meat-animals … and no mammalian products, milk, butter or cheese; the only high-protein, high-carbohydrate foods are the various kinds of eggs, fish, nuts and Hainish grains.” I did, however, add some hot-climate items found in Manhattan’s Chinatown for their space-age looks and good flavors (dragonfruit, pomelo, galangal, chilis, and kaffir limes).

Serve with hot beer.